species/environment.yaml

name: yspecies
channels:
  - antonkulaga
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python=3.8
  - jupyterlab>=2.2.8
  - dvc>=1.7.3
  - papermill>=2.1.2
  - anaconda-client>=1.7.2
  - conda-build>=3.20.2
  - mamba>=0.5.1
  - scikit-learn>=0.23.2
  - seaborn>=0.10.1
  - more-itertools>=8.4.0
  - shap>=0.36.0
  - lightgbm>=3.0.0
  - statsmodels>=0.11.1
  - optuna>=2.1.0
  - click>=7.1.2
  - loguru>=0.5.0
  - plotly>=4.11.0
  #- yspecies=0.2.3
  - pip
  - pip:
      - interpret>=0.2.1 #for experimental notebooks with explained boosting machines

prefix: /data/miniconda3/envs/species